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Education & Resources

Lecture notes on physical concepts for molecular biophysics


Online textbook


Notes, worksheets, and video lectures on nonlinear and two-dimensional spectroscopy


Open source programs to calculate amide I IR and 2D IR spectra from molecular dynamics simulations

Reference: "Computational Amide I 2D IR Spectroscopy as a Probe of Protein Structure and Dynamics," Mike Reppert and Andrei Tokmakoff, Annu. Rev. Phys. Chem. 67, 359-386 (2016).


Carlos Baiz, Mike Reppert and Andrei Tokmakoff, in Ultrafast Infrared Vibrational Spectroscopy, ed. by Michael D. Fayer (Taylor & Francis, New York, 2013), pp. 361-404.


Reference: "Coherent two-dimensional infrared spectroscopy: Quantitative analysis of protein secondary structure in solution" Carlos Baiz, Sam Peng, Mike Reppert, Kevin Jones, and Andrei Tokmakoff, Analyst 137, 1793-1799 (2012).


Data for describing the propagation of ultrafast mid-IR pulses through dispersive media